==39794== Memcheck, a memory error detector ==39794== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39794== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39794== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39794== Parent PID: 24047 ==39794== ==39794== ==39794== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39794== Open file descriptor 12: ==39794== at 0xF81A0FD: pipe (pipe.c:29) ==39794== by 0x196D007D: ??? ==39794== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39794== by 0x10112418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39794== by 0x100ABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39794== by 0x1029BD38: PetscInitialize (pinit.c:924) ==39794== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39794== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39794== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39794== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39794== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39794== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39794== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39794== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39794== ==39794== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39794== at 0xF81EA9C: __open_nocancel (open64_nocancel.c:39) ==39794== by 0xF7A2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39794== by 0xF158822: ??? ==39794== by 0xF15896F: ??? ==39794== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39794== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39794== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39794== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39794== by 0x10112418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39794== by 0x100ABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39794== by 0x1029BD38: PetscInitialize (pinit.c:924) ==39794== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39794== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39794== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39794== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39794== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39794== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39794== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39794== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39794== ==39794== Open file descriptor 145: ==39794== ==39794== ==39794== Open file descriptor 142: ==39794== ==39794== ==39794== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==39794== ==39794== ==39794== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39794== ==39794== ==39794== ==39794== HEAP SUMMARY: ==39794== in use at exit: 36,596 bytes in 307 blocks ==39794== total heap usage: 5,207,166 allocs, 5,206,859 frees, 448,895,723 bytes allocated ==39794== ==39794== LEAK SUMMARY: ==39794== definitely lost: 0 bytes in 0 blocks ==39794== indirectly lost: 0 bytes in 0 blocks ==39794== possibly lost: 0 bytes in 0 blocks ==39794== still reachable: 56 bytes in 3 blocks ==39794== suppressed: 36,540 bytes in 304 blocks ==39794== Reachable blocks (those to which a pointer was found) are not shown. ==39794== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39794== ==39794== For lists of detected and suppressed errors, rerun with: -s ==39794== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)