==40628== Memcheck, a memory error detector ==40628== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40628== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40628== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40628== Parent PID: 24047 ==40628== ==40628== ==40628== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40628== Open file descriptor 12: ==40628== at 0x125910FD: pipe (pipe.c:29) ==40628== by 0x1B39207D: ??? ==40628== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40628== by 0x11E99418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40628== by 0x11E32D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40628== by 0x6210D38: PetscInitialize (pinit.c:924) ==40628== by 0x11D58E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40628== by 0x11D58EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40628== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40628== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40628== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40628== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40628== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40628== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40628== ==40628== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40628== at 0x12595A9C: __open_nocancel (open64_nocancel.c:39) ==40628== by 0x12519BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40628== by 0x11D96822: ??? ==40628== by 0x11D9696F: ??? ==40628== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40628== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40628== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40628== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40628== by 0x11E99418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40628== by 0x11E32D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40628== by 0x6210D38: PetscInitialize (pinit.c:924) ==40628== by 0x11D58E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40628== by 0x11D58EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40628== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40628== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40628== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40628== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40628== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40628== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40628== ==40628== Open file descriptor 145: ==40628== ==40628== ==40628== Open file descriptor 142: ==40628== ==40628== ==40628== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==40628== ==40628== ==40628== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40628== ==40628== ==40628== ==40628== HEAP SUMMARY: ==40628== in use at exit: 36,685 bytes in 311 blocks ==40628== total heap usage: 1,739,446 allocs, 1,739,135 frees, 184,511,677 bytes allocated ==40628== ==40628== LEAK SUMMARY: ==40628== definitely lost: 0 bytes in 0 blocks ==40628== indirectly lost: 0 bytes in 0 blocks ==40628== possibly lost: 0 bytes in 0 blocks ==40628== still reachable: 56 bytes in 3 blocks ==40628== suppressed: 36,629 bytes in 308 blocks ==40628== Reachable blocks (those to which a pointer was found) are not shown. ==40628== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40628== ==40628== For lists of detected and suppressed errors, rerun with: -s ==40628== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)