==40109== Memcheck, a memory error detector ==40109== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40109== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40109== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40109== Parent PID: 24047 ==40109== ==40109== ==40109== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40109== Open file descriptor 12: ==40109== at 0x1086C0FD: pipe (pipe.c:29) ==40109== by 0x1B39407D: ??? ==40109== by 0x155324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40109== by 0x104B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x10452D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x6277D38: PetscInitialize (pinit.c:924) ==40109== by 0x1039BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40109== by 0x1039BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40109== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40109== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40109== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40109== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40109== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40109== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40109== ==40109== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40109== at 0x10870A9C: __open_nocancel (open64_nocancel.c:39) ==40109== by 0x107F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40109== by 0x6122822: ??? ==40109== by 0x612296F: ??? ==40109== by 0x155D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40109== by 0x155D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40109== by 0x1558D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40109== by 0x155322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40109== by 0x104B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x10452D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x6277D38: PetscInitialize (pinit.c:924) ==40109== by 0x1039BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40109== by 0x1039BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40109== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40109== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40109== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40109== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40109== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40109== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40109== ==40109== Open file descriptor 145: ==40109== ==40109== ==40109== Open file descriptor 142: ==40109== ==40109== ==40109== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt ==40109== ==40109== ==40109== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40109== ==40109== ==40109== ==40109== HEAP SUMMARY: ==40109== in use at exit: 36,653 bytes in 310 blocks ==40109== total heap usage: 169,333 allocs, 169,023 frees, 88,875,363 bytes allocated ==40109== ==40109== LEAK SUMMARY: ==40109== definitely lost: 0 bytes in 0 blocks ==40109== indirectly lost: 0 bytes in 0 blocks ==40109== possibly lost: 0 bytes in 0 blocks ==40109== still reachable: 24 bytes in 2 blocks ==40109== suppressed: 36,629 bytes in 308 blocks ==40109== Reachable blocks (those to which a pointer was found) are not shown. ==40109== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40109== ==40109== For lists of detected and suppressed errors, rerun with: -s ==40109== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)