==40617== Memcheck, a memory error detector ==40617== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40617== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40617== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40617== Parent PID: 24327 ==40617== ==40617== ==40617== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40617== Open file descriptor 12: ==40617== at 0x111CE0FD: pipe (pipe.c:29) ==40617== by 0x1B48807D: ??? ==40617== by 0x144C54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40617== by 0x11BF1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40617== by 0x11B8AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40617== by 0x11D36D38: PetscInitialize (pinit.c:924) ==40617== by 0x10ACEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40617== by 0x10ACEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40617== by 0x126AD2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40617== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40617== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40617== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40617== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40617== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40617== ==40617== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40617== at 0x111D2A9C: __open_nocancel (open64_nocancel.c:39) ==40617== by 0x11156BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40617== by 0x10B0C822: ??? ==40617== by 0x10B0C96F: ??? ==40617== by 0x1456A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40617== by 0x1456A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40617== by 0x14520922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40617== by 0x144C52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40617== by 0x11BF1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40617== by 0x11B8AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40617== by 0x11D36D38: PetscInitialize (pinit.c:924) ==40617== by 0x10ACEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40617== by 0x10ACEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40617== by 0x126AD2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40617== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40617== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40617== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40617== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40617== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40617== ==40617== Open file descriptor 145: ==40617== ==40617== ==40617== Open file descriptor 142: ==40617== ==40617== ==40617== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40617== ==40617== ==40617== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40617== ==40617== ==40617== ==40617== HEAP SUMMARY: ==40617== in use at exit: 35,215 bytes in 290 blocks ==40617== total heap usage: 40,345 allocs, 40,055 frees, 8,098,162 bytes allocated ==40617== ==40617== LEAK SUMMARY: ==40617== definitely lost: 0 bytes in 0 blocks ==40617== indirectly lost: 0 bytes in 0 blocks ==40617== possibly lost: 0 bytes in 0 blocks ==40617== still reachable: 56 bytes in 3 blocks ==40617== suppressed: 35,159 bytes in 287 blocks ==40617== Reachable blocks (those to which a pointer was found) are not shown. ==40617== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40617== ==40617== For lists of detected and suppressed errors, rerun with: -s ==40617== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)