==40768== Memcheck, a memory error detector ==40768== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40768== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40768== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40768== Parent PID: 24251 ==40768== ==40768== ==40768== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40768== Open file descriptor 12: ==40768== at 0x126C70FD: pipe (pipe.c:29) ==40768== by 0x1B48607D: ??? ==40768== by 0x166114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40768== by 0x11FCF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40768== by 0x11F68D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40768== by 0x6277D38: PetscInitialize (pinit.c:924) ==40768== by 0x11EB1E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40768== by 0x11EB1EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40768== by 0x224375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40768== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40768== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40768== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40768== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40768== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40768== ==40768== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40768== at 0x126CBA9C: __open_nocancel (open64_nocancel.c:39) ==40768== by 0x1264FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40768== by 0x6122822: ??? ==40768== by 0x612296F: ??? ==40768== by 0x166B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40768== by 0x166B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40768== by 0x1666C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40768== by 0x166112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40768== by 0x11FCF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40768== by 0x11F68D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40768== by 0x6277D38: PetscInitialize (pinit.c:924) ==40768== by 0x11EB1E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40768== by 0x11EB1EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40768== by 0x224375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40768== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40768== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40768== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40768== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40768== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40768== ==40768== Open file descriptor 145: ==40768== ==40768== ==40768== Open file descriptor 142: ==40768== ==40768== ==40768== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40768== ==40768== ==40768== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40768== ==40768== ==40768== ==40768== HEAP SUMMARY: ==40768== in use at exit: 35,142 bytes in 286 blocks ==40768== total heap usage: 3,765,084 allocs, 3,764,798 frees, 300,888,290 bytes allocated ==40768== ==40768== LEAK SUMMARY: ==40768== definitely lost: 0 bytes in 0 blocks ==40768== indirectly lost: 0 bytes in 0 blocks ==40768== possibly lost: 0 bytes in 0 blocks ==40768== still reachable: 56 bytes in 3 blocks ==40768== suppressed: 35,086 bytes in 283 blocks ==40768== Reachable blocks (those to which a pointer was found) are not shown. ==40768== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40768== ==40768== For lists of detected and suppressed errors, rerun with: -s ==40768== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)