==40513== Memcheck, a memory error detector ==40513== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40513== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40513== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40513== Parent PID: 24251 ==40513== ==40513== ==40513== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40513== Open file descriptor 12: ==40513== at 0x10CA50FD: pipe (pipe.c:29) ==40513== by 0x1B48507D: ??? ==40513== by 0x156264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40513== by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40513== by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40513== by 0x6277D38: PetscInitialize (pinit.c:924) ==40513== by 0x1048FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40513== by 0x1048FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40513== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40513== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40513== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40513== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40513== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40513== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40513== ==40513== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40513== at 0x10CA9A9C: __open_nocancel (open64_nocancel.c:39) ==40513== by 0x10C2DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40513== by 0x6122822: ??? ==40513== by 0x612296F: ??? ==40513== by 0x156CB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40513== by 0x156CB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40513== by 0x15681922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40513== by 0x156262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40513== by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40513== by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40513== by 0x6277D38: PetscInitialize (pinit.c:924) ==40513== by 0x1048FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40513== by 0x1048FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40513== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40513== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40513== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40513== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40513== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40513== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40513== ==40513== Open file descriptor 145: ==40513== ==40513== ==40513== Open file descriptor 142: ==40513== ==40513== ==40513== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40513== ==40513== ==40513== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40513== ==40513== ==40513== ==40513== HEAP SUMMARY: ==40513== in use at exit: 35,279 bytes in 291 blocks ==40513== total heap usage: 845,846 allocs, 845,555 frees, 129,827,835 bytes allocated ==40513== ==40513== LEAK SUMMARY: ==40513== definitely lost: 0 bytes in 0 blocks ==40513== indirectly lost: 0 bytes in 0 blocks ==40513== possibly lost: 0 bytes in 0 blocks ==40513== still reachable: 120 bytes in 4 blocks ==40513== suppressed: 35,159 bytes in 287 blocks ==40513== Reachable blocks (those to which a pointer was found) are not shown. ==40513== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40513== ==40513== For lists of detected and suppressed errors, rerun with: -s ==40513== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)