==35539== Memcheck, a memory error detector ==35539== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==35539== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==35539== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==35539== Parent PID: 24251 ==35539== ==35539== ==35539== FILE DESCRIPTORS: 9 open (3 std) at exit. ==35539== Open file descriptor 12: ==35539== at 0xFA390FD: pipe (pipe.c:29) ==35539== by 0x197C407D: ??? ==35539== by 0x12C324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35539== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35539== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35539== by 0x10476D38: PetscInitialize (pinit.c:924) ==35539== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35539== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35539== by 0x1D7568: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35539== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35539== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35539== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35539== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35539== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35539== ==35539== Open file descriptor 8: /dev/shm/open_mpi.0000 ==35539== at 0xFA3DA9C: __open_nocancel (open64_nocancel.c:39) ==35539== by 0xF9C1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==35539== by 0xF24C822: ??? ==35539== by 0xF24C96F: ??? ==35539== by 0x12CD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35539== by 0x12CD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35539== by 0x12C8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35539== by 0x12C322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35539== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35539== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35539== by 0x10476D38: PetscInitialize (pinit.c:924) ==35539== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35539== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35539== by 0x1D7568: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35539== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35539== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35539== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35539== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35539== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35539== ==35539== Open file descriptor 145: ==35539== ==35539== ==35539== Open file descriptor 142: ==35539== ==35539== ==35539== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==35539== ==35539== ==35539== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==35539== ==35539== ==35539== ==35539== HEAP SUMMARY: ==35539== in use at exit: 35,142 bytes in 287 blocks ==35539== total heap usage: 11,666,389 allocs, 11,666,102 frees, 877,106,246 bytes allocated ==35539== ==35539== LEAK SUMMARY: ==35539== definitely lost: 0 bytes in 0 blocks ==35539== indirectly lost: 0 bytes in 0 blocks ==35539== possibly lost: 0 bytes in 0 blocks ==35539== still reachable: 72 bytes in 4 blocks ==35539== suppressed: 35,070 bytes in 283 blocks ==35539== Reachable blocks (those to which a pointer was found) are not shown. ==35539== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==35539== ==35539== For lists of detected and suppressed errors, rerun with: -s ==35539== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)