==27059== Memcheck, a memory error detector ==27059== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27059== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27059== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27059== Parent PID: 24260 ==27059== ==27059== ==27059== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27059== Open file descriptor 12: ==27059== at 0xFFE00FD: pipe (pipe.c:29) ==27059== by 0x199CF07D: ??? ==27059== by 0x12E474CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27059== by 0x1053B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27059== by 0x104D4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27059== by 0x10680D38: PetscInitialize (pinit.c:924) ==27059== by 0xF7B5E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27059== by 0xF7B5EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27059== by 0x222460: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27059== by 0x21BB51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27059== by 0x21F68A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27059== by 0x21F52A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27059== by 0x21FBC1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27059== by 0x219F35: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27059== ==27059== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27059== at 0xFFE4A9C: __open_nocancel (open64_nocancel.c:39) ==27059== by 0xFF68BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27059== by 0xF7F3822: ??? ==27059== by 0xF7F396F: ??? ==27059== by 0x12EEC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27059== by 0x12EEC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27059== by 0x12EA2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27059== by 0x12E472DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27059== by 0x1053B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27059== by 0x104D4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27059== by 0x10680D38: PetscInitialize (pinit.c:924) ==27059== by 0xF7B5E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27059== by 0xF7B5EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27059== by 0x222460: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27059== by 0x21BB51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27059== by 0x21F68A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27059== by 0x21F52A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27059== by 0x21FBC1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27059== by 0x219F35: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27059== ==27059== Open file descriptor 145: ==27059== ==27059== ==27059== Open file descriptor 142: ==27059== ==27059== ==27059== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27059== ==27059== ==27059== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27059== ==27059== ==27059== ==27059== HEAP SUMMARY: ==27059== in use at exit: 35,126 bytes in 286 blocks ==27059== total heap usage: 8,105,549 allocs, 8,105,263 frees, 1,364,736,305 bytes allocated ==27059== ==27059== LEAK SUMMARY: ==27059== definitely lost: 0 bytes in 0 blocks ==27059== indirectly lost: 0 bytes in 0 blocks ==27059== possibly lost: 0 bytes in 0 blocks ==27059== still reachable: 56 bytes in 3 blocks ==27059== suppressed: 35,070 bytes in 283 blocks ==27059== Reachable blocks (those to which a pointer was found) are not shown. ==27059== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27059== ==27059== For lists of detected and suppressed errors, rerun with: -s ==27059== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)