==40992== Memcheck, a memory error detector ==40992== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40992== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40992== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40992== Parent PID: 24260 ==40992== ==40992== ==40992== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40992== Open file descriptor 12: ==40992== at 0x128CC0FD: pipe (pipe.c:29) ==40992== by 0x1B6CD07D: ??? ==40992== by 0x168724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40992== by 0x121D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40992== by 0x1216DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40992== by 0x624DD38: PetscInitialize (pinit.c:924) ==40992== by 0x12093E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40992== by 0x12093EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40992== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40992== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40992== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40992== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40992== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40992== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40992== ==40992== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40992== at 0x128D0A9C: __open_nocancel (open64_nocancel.c:39) ==40992== by 0x12854BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40992== by 0x120D1822: ??? ==40992== by 0x120D196F: ??? ==40992== by 0x169176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40992== by 0x16917938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40992== by 0x168CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40992== by 0x168722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40992== by 0x121D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40992== by 0x1216DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40992== by 0x624DD38: PetscInitialize (pinit.c:924) ==40992== by 0x12093E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40992== by 0x12093EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40992== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40992== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40992== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40992== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40992== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40992== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40992== ==40992== Open file descriptor 145: ==40992== ==40992== ==40992== Open file descriptor 142: ==40992== ==40992== ==40992== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==40992== ==40992== ==40992== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40992== ==40992== ==40992== ==40992== HEAP SUMMARY: ==40992== in use at exit: 35,295 bytes in 291 blocks ==40992== total heap usage: 1,601,709 allocs, 1,601,418 frees, 127,299,217 bytes allocated ==40992== ==40992== LEAK SUMMARY: ==40992== definitely lost: 0 bytes in 0 blocks ==40992== indirectly lost: 0 bytes in 0 blocks ==40992== possibly lost: 0 bytes in 0 blocks ==40992== still reachable: 136 bytes in 4 blocks ==40992== suppressed: 35,159 bytes in 287 blocks ==40992== Reachable blocks (those to which a pointer was found) are not shown. ==40992== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40992== ==40992== For lists of detected and suppressed errors, rerun with: -s ==40992== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)