==40611== Memcheck, a memory error detector ==40611== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40611== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40611== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info ==40611== Parent PID: 24253 ==40611== ==40611== ==40611== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40611== Open file descriptor 12: ==40611== at 0xF4A90FD: pipe (pipe.c:29) ==40611== by 0x1B48807D: ??? ==40611== by 0x144FF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40611== by 0x11BF1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40611== by 0x11B8AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40611== by 0x11D36D38: PetscInitialize (pinit.c:924) ==40611== by 0xF111E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40611== by 0xF111EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40611== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40611== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40611== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40611== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40611== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40611== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40611== ==40611== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40611== at 0xF4ADA9C: __open_nocancel (open64_nocancel.c:39) ==40611== by 0xF431BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40611== by 0x6122822: ??? ==40611== by 0x612296F: ??? ==40611== by 0x145A46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40611== by 0x145A4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40611== by 0x1455A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40611== by 0x144FF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40611== by 0x11BF1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40611== by 0x11B8AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40611== by 0x11D36D38: PetscInitialize (pinit.c:924) ==40611== by 0xF111E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40611== by 0xF111EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40611== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40611== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40611== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40611== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40611== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40611== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40611== ==40611== Open file descriptor 145: ==40611== ==40611== ==40611== Open file descriptor 142: ==40611== ==40611== ==40611== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt ==40611== ==40611== ==40611== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40611== ==40611== ==40611== ==40611== HEAP SUMMARY: ==40611== in use at exit: 35,215 bytes in 290 blocks ==40611== total heap usage: 50,664 allocs, 50,374 frees, 9,290,280 bytes allocated ==40611== ==40611== LEAK SUMMARY: ==40611== definitely lost: 0 bytes in 0 blocks ==40611== indirectly lost: 0 bytes in 0 blocks ==40611== possibly lost: 0 bytes in 0 blocks ==40611== still reachable: 56 bytes in 3 blocks ==40611== suppressed: 35,159 bytes in 287 blocks ==40611== Reachable blocks (those to which a pointer was found) are not shown. ==40611== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40611== ==40611== For lists of detected and suppressed errors, rerun with: -s ==40611== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)