==26938== Memcheck, a memory error detector ==26938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26938== Parent PID: 24253 ==26938== ==26938== ==26938== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26938== Open file descriptor 12: ==26938== at 0xFA390FD: pipe (pipe.c:29) ==26938== by 0x197C407D: ??? ==26938== by 0x12C324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26938== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26938== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26938== by 0x10476D38: PetscInitialize (pinit.c:924) ==26938== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26938== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26938== by 0x213584: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26938== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26938== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26938== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26938== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26938== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==26938== ==26938== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26938== at 0xFA3DA9C: __open_nocancel (open64_nocancel.c:39) ==26938== by 0xF9C1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26938== by 0xF24C822: ??? ==26938== by 0xF24C96F: ??? ==26938== by 0x12CD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26938== by 0x12CD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26938== by 0x12C8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26938== by 0x12C322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26938== by 0x10331418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26938== by 0x102CAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26938== by 0x10476D38: PetscInitialize (pinit.c:924) ==26938== by 0xF20EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26938== by 0xF20EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26938== by 0x213584: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26938== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26938== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26938== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26938== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26938== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==26938== ==26938== Open file descriptor 145: ==26938== ==26938== ==26938== Open file descriptor 142: ==26938== ==26938== ==26938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==26938== ==26938== ==26938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26938== ==26938== ==26938== ==26938== HEAP SUMMARY: ==26938== in use at exit: 35,158 bytes in 287 blocks ==26938== total heap usage: 18,260,661 allocs, 18,260,374 frees, 28,716,376,635 bytes allocated ==26938== ==26938== LEAK SUMMARY: ==26938== definitely lost: 0 bytes in 0 blocks ==26938== indirectly lost: 0 bytes in 0 blocks ==26938== possibly lost: 0 bytes in 0 blocks ==26938== still reachable: 88 bytes in 4 blocks ==26938== suppressed: 35,070 bytes in 283 blocks ==26938== Reachable blocks (those to which a pointer was found) are not shown. ==26938== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26938== ==26938== For lists of detected and suppressed errors, rerun with: -s ==26938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)