==40613== Memcheck, a memory error detector ==40613== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40613== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40613== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40613== Parent PID: 24253 ==40613== ==40613== ==40613== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40613== Open file descriptor 12: ==40613== at 0x129090FD: pipe (pipe.c:29) ==40613== by 0x1B48507D: ??? ==40613== by 0x166724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40613== by 0x12211418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40613== by 0x121AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40613== by 0x6277D38: PetscInitialize (pinit.c:924) ==40613== by 0x120F3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40613== by 0x120F3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40613== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40613== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40613== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40613== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40613== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40613== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40613== ==40613== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40613== at 0x1290DA9C: __open_nocancel (open64_nocancel.c:39) ==40613== by 0x12891BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40613== by 0x6122822: ??? ==40613== by 0x612296F: ??? ==40613== by 0x167176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40613== by 0x16717938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40613== by 0x166CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40613== by 0x166722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40613== by 0x12211418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40613== by 0x121AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40613== by 0x6277D38: PetscInitialize (pinit.c:924) ==40613== by 0x120F3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40613== by 0x120F3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40613== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40613== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40613== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40613== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40613== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40613== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40613== ==40613== Open file descriptor 145: ==40613== ==40613== ==40613== Open file descriptor 142: ==40613== ==40613== ==40613== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==40613== ==40613== ==40613== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40613== ==40613== ==40613== ==40613== HEAP SUMMARY: ==40613== in use at exit: 35,183 bytes in 289 blocks ==40613== total heap usage: 504,255 allocs, 503,966 frees, 216,083,985 bytes allocated ==40613== ==40613== LEAK SUMMARY: ==40613== definitely lost: 0 bytes in 0 blocks ==40613== indirectly lost: 0 bytes in 0 blocks ==40613== possibly lost: 0 bytes in 0 blocks ==40613== still reachable: 24 bytes in 2 blocks ==40613== suppressed: 35,159 bytes in 287 blocks ==40613== Reachable blocks (those to which a pointer was found) are not shown. ==40613== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40613== ==40613== For lists of detected and suppressed errors, rerun with: -s ==40613== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)