==26307== Memcheck, a memory error detector ==26307== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26307== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26307== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==26307== Parent PID: 24019 ==26307== ==26307== ==26307== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26307== Open file descriptor 12: ==26307== at 0xEFAC0FD: pipe (pipe.c:29) ==26307== by 0x196D107D: ??? ==26307== by 0x13C724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26307== by 0xEBF9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26307== by 0xEB92D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26307== by 0xD889D38: PetscInitialize (pinit.c:924) ==26307== by 0xD6F8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26307== by 0xD6F8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26307== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26307== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26307== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26307== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26307== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26307== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26307== ==26307== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26307== at 0xEFB0A9C: __open_nocancel (open64_nocancel.c:39) ==26307== by 0xEF34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26307== by 0xD736822: ??? ==26307== by 0xD73696F: ??? ==26307== by 0x13D176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26307== by 0x13D17938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26307== by 0x13CCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26307== by 0x13C722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26307== by 0xEBF9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26307== by 0xEB92D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26307== by 0xD889D38: PetscInitialize (pinit.c:924) ==26307== by 0xD6F8E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26307== by 0xD6F8EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26307== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26307== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26307== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26307== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26307== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26307== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26307== ==26307== Open file descriptor 145: ==26307== ==26307== ==26307== Open file descriptor 142: ==26307== ==26307== ==26307== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==26307== ==26307== ==26307== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26307== ==26307== ==26307== ==26307== HEAP SUMMARY: ==26307== in use at exit: 36,637 bytes in 310 blocks ==26307== total heap usage: 149,856 allocs, 149,546 frees, 18,591,437 bytes allocated ==26307== ==26307== LEAK SUMMARY: ==26307== definitely lost: 0 bytes in 0 blocks ==26307== indirectly lost: 0 bytes in 0 blocks ==26307== possibly lost: 0 bytes in 0 blocks ==26307== still reachable: 24 bytes in 2 blocks ==26307== suppressed: 36,613 bytes in 308 blocks ==26307== Reachable blocks (those to which a pointer was found) are not shown. ==26307== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26307== ==26307== For lists of detected and suppressed errors, rerun with: -s ==26307== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)