==25919== Memcheck, a memory error detector ==25919== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25919== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25919== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info ==25919== Parent PID: 24019 ==25919== ==25919== ==25919== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25919== Open file descriptor 12: ==25919== at 0xED260FD: pipe (pipe.c:29) ==25919== by 0x196D107D: ??? ==25919== by 0x13C214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25919== by 0xE975418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25919== by 0xE90ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25919== by 0xD5E2D38: PetscInitialize (pinit.c:924) ==25919== by 0xD4B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25919== by 0xD4B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25919== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25919== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25919== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25919== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25919== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25919== by 0x113935: main (TestCellSrn.cpp:18) ==25919== ==25919== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25919== at 0xED2AA9C: __open_nocancel (open64_nocancel.c:39) ==25919== by 0xECAEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25919== by 0xE872822: ??? ==25919== by 0xE87296F: ??? ==25919== by 0x13CC66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25919== by 0x13CC6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25919== by 0x13C7C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25919== by 0x13C212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25919== by 0xE975418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25919== by 0xE90ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25919== by 0xD5E2D38: PetscInitialize (pinit.c:924) ==25919== by 0xD4B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25919== by 0xD4B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25919== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25919== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25919== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25919== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25919== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25919== by 0x113935: main (TestCellSrn.cpp:18) ==25919== ==25919== Open file descriptor 145: ==25919== ==25919== ==25919== Open file descriptor 142: ==25919== ==25919== ==25919== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt ==25919== ==25919== ==25919== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25919== ==25919== ==25919== ==25919== HEAP SUMMARY: ==25919== in use at exit: 36,733 bytes in 312 blocks ==25919== total heap usage: 47,097 allocs, 46,785 frees, 8,339,982 bytes allocated ==25919== ==25919== LEAK SUMMARY: ==25919== definitely lost: 0 bytes in 0 blocks ==25919== indirectly lost: 0 bytes in 0 blocks ==25919== possibly lost: 0 bytes in 0 blocks ==25919== still reachable: 120 bytes in 4 blocks ==25919== suppressed: 36,613 bytes in 308 blocks ==25919== Reachable blocks (those to which a pointer was found) are not shown. ==25919== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25919== ==25919== For lists of detected and suppressed errors, rerun with: -s ==25919== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)