==39994== Memcheck, a memory error detector ==39994== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39994== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39994== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39994== Parent PID: 24019 ==39994== ==39994== ==39994== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39994== Open file descriptor 12: ==39994== at 0x10D130FD: pipe (pipe.c:29) ==39994== by 0x196D007D: ??? ==39994== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39994== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39994== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39994== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==39994== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39994== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39994== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39994== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39994== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39994== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39994== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39994== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39994== ==39994== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39994== at 0x10D17A9C: __open_nocancel (open64_nocancel.c:39) ==39994== by 0x10C9BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39994== by 0xF158822: ??? ==39994== by 0xF15896F: ??? ==39994== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39994== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39994== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39994== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39994== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39994== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39994== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==39994== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39994== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39994== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39994== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39994== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39994== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39994== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39994== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39994== ==39994== Open file descriptor 145: ==39994== ==39994== ==39994== Open file descriptor 142: ==39994== ==39994== ==39994== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39994== ==39994== ==39994== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39994== ==39994== ==39994== ==39994== HEAP SUMMARY: ==39994== in use at exit: 36,669 bytes in 311 blocks ==39994== total heap usage: 563,496 allocs, 563,185 frees, 320,648,972 bytes allocated ==39994== ==39994== LEAK SUMMARY: ==39994== definitely lost: 0 bytes in 0 blocks ==39994== indirectly lost: 0 bytes in 0 blocks ==39994== possibly lost: 0 bytes in 0 blocks ==39994== still reachable: 56 bytes in 3 blocks ==39994== suppressed: 36,613 bytes in 308 blocks ==39994== Reachable blocks (those to which a pointer was found) are not shown. ==39994== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39994== ==39994== For lists of detected and suppressed errors, rerun with: -s ==39994== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)