==40645== Memcheck, a memory error detector ==40645== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40645== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40645== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info ==40645== Parent PID: 24019 ==40645== ==40645== ==40645== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40645== Open file descriptor 12: ==40645== at 0xF3B50FD: pipe (pipe.c:29) ==40645== by 0x1B39107D: ??? ==40645== by 0x143E14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40645== by 0x11AFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40645== by 0x11A96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40645== by 0x11C42D38: PetscInitialize (pinit.c:924) ==40645== by 0xF01DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40645== by 0xF01DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40645== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40645== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40645== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40645== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40645== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40645== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40645== ==40645== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40645== at 0xF3B9A9C: __open_nocancel (open64_nocancel.c:39) ==40645== by 0xF33DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40645== by 0x6122822: ??? ==40645== by 0x612296F: ??? ==40645== by 0x144866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40645== by 0x14486938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40645== by 0x1443C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40645== by 0x143E12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40645== by 0x11AFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40645== by 0x11A96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40645== by 0x11C42D38: PetscInitialize (pinit.c:924) ==40645== by 0xF01DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40645== by 0xF01DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40645== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40645== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40645== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40645== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40645== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40645== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40645== ==40645== Open file descriptor 145: ==40645== ==40645== ==40645== Open file descriptor 142: ==40645== ==40645== ==40645== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt ==40645== ==40645== ==40645== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40645== ==40645== ==40645== ==40645== HEAP SUMMARY: ==40645== in use at exit: 36,685 bytes in 311 blocks ==40645== total heap usage: 50,580 allocs, 50,269 frees, 9,323,840 bytes allocated ==40645== ==40645== LEAK SUMMARY: ==40645== definitely lost: 0 bytes in 0 blocks ==40645== indirectly lost: 0 bytes in 0 blocks ==40645== possibly lost: 0 bytes in 0 blocks ==40645== still reachable: 56 bytes in 3 blocks ==40645== suppressed: 36,629 bytes in 308 blocks ==40645== Reachable blocks (those to which a pointer was found) are not shown. ==40645== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40645== ==40645== For lists of detected and suppressed errors, rerun with: -s ==40645== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)