==27001== Memcheck, a memory error detector ==27001== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27001== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27001== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info ==27001== Parent PID: 24019 ==27001== ==27001== ==27001== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27001== Open file descriptor 12: ==27001== at 0xF9010FD: pipe (pipe.c:29) ==27001== by 0x196D007D: ??? ==27001== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27001== by 0x101FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27001== by 0x10194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27001== by 0x10382D38: PetscInitialize (pinit.c:924) ==27001== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27001== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27001== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27001== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27001== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27001== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27001== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27001== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==27001== ==27001== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27001== at 0xF905A9C: __open_nocancel (open64_nocancel.c:39) ==27001== by 0xF889BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27001== by 0xF158822: ??? ==27001== by 0xF15896F: ??? ==27001== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27001== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27001== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27001== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27001== by 0x101FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27001== by 0x10194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27001== by 0x10382D38: PetscInitialize (pinit.c:924) ==27001== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27001== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27001== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27001== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27001== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27001== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27001== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27001== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==27001== ==27001== Open file descriptor 145: ==27001== ==27001== ==27001== Open file descriptor 142: ==27001== ==27001== ==27001== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt ==27001== ==27001== ==27001== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27001== ==27001== ==27001== ==27001== HEAP SUMMARY: ==27001== in use at exit: 36,596 bytes in 307 blocks ==27001== total heap usage: 3,720,633 allocs, 3,720,326 frees, 3,156,111,227 bytes allocated ==27001== ==27001== LEAK SUMMARY: ==27001== definitely lost: 0 bytes in 0 blocks ==27001== indirectly lost: 0 bytes in 0 blocks ==27001== possibly lost: 0 bytes in 0 blocks ==27001== still reachable: 56 bytes in 3 blocks ==27001== suppressed: 36,540 bytes in 304 blocks ==27001== Reachable blocks (those to which a pointer was found) are not shown. ==27001== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27001== ==27001== For lists of detected and suppressed errors, rerun with: -s ==27001== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)