==26335== Memcheck, a memory error detector ==26335== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26335== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26335== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26335== Parent PID: 24019 ==26335== ==26335== ==26335== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26335== Open file descriptor 12: ==26335== at 0xDB680FD: pipe (pipe.c:29) ==26335== by 0x196D007D: ??? ==26335== by 0x12ABD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26335== by 0xFE0F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26335== by 0xFDA8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26335== by 0xFF56D38: PetscInitialize (pinit.c:924) ==26335== by 0xD76BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26335== by 0xD76BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26335== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26335== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26335== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26335== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26335== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26335== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26335== ==26335== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26335== at 0xDB6CA9C: __open_nocancel (open64_nocancel.c:39) ==26335== by 0xDAF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26335== by 0xD7A9822: ??? ==26335== by 0xD7A996F: ??? ==26335== by 0x12B626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26335== by 0x12B62938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26335== by 0x12B18922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26335== by 0x12ABD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26335== by 0xFE0F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26335== by 0xFDA8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26335== by 0xFF56D38: PetscInitialize (pinit.c:924) ==26335== by 0xD76BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26335== by 0xD76BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26335== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26335== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26335== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26335== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26335== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26335== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26335== ==26335== Open file descriptor 145: ==26335== ==26335== ==26335== Open file descriptor 142: ==26335== ==26335== ==26335== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26335== ==26335== ==26335== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26335== ==26335== ==26335== ==26335== HEAP SUMMARY: ==26335== in use at exit: 36,637 bytes in 310 blocks ==26335== total heap usage: 42,164 allocs, 41,854 frees, 8,267,246 bytes allocated ==26335== ==26335== LEAK SUMMARY: ==26335== definitely lost: 0 bytes in 0 blocks ==26335== indirectly lost: 0 bytes in 0 blocks ==26335== possibly lost: 0 bytes in 0 blocks ==26335== still reachable: 24 bytes in 2 blocks ==26335== suppressed: 36,613 bytes in 308 blocks ==26335== Reachable blocks (those to which a pointer was found) are not shown. ==26335== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26335== ==26335== For lists of detected and suppressed errors, rerun with: -s ==26335== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)