==40161== Memcheck, a memory error detector ==40161== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40161== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40161== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40161== Parent PID: 24236 ==40161== ==40161== ==40161== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40161== Open file descriptor 12: ==40161== at 0xFB180FD: pipe (pipe.c:29) ==40161== by 0x199D107D: ??? ==40161== by 0x12E324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40161== by 0x10410418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40161== by 0x103A9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40161== by 0x10599D38: PetscInitialize (pinit.c:924) ==40161== by 0xF418E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40161== by 0xF418EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40161== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40161== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40161== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40161== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40161== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40161== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40161== ==40161== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40161== at 0xFB1CA9C: __open_nocancel (open64_nocancel.c:39) ==40161== by 0xFAA0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40161== by 0xF456822: ??? ==40161== by 0xF45696F: ??? ==40161== by 0x12ED76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40161== by 0x12ED7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40161== by 0x12E8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40161== by 0x12E322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40161== by 0x10410418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40161== by 0x103A9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40161== by 0x10599D38: PetscInitialize (pinit.c:924) ==40161== by 0xF418E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40161== by 0xF418EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40161== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40161== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40161== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40161== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40161== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40161== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40161== ==40161== Open file descriptor 145: ==40161== ==40161== ==40161== Open file descriptor 142: ==40161== ==40161== ==40161== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==40161== ==40161== ==40161== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40161== ==40161== ==40161== ==40161== HEAP SUMMARY: ==40161== in use at exit: 35,126 bytes in 286 blocks ==40161== total heap usage: 5,207,439 allocs, 5,207,153 frees, 448,874,708 bytes allocated ==40161== ==40161== LEAK SUMMARY: ==40161== definitely lost: 0 bytes in 0 blocks ==40161== indirectly lost: 0 bytes in 0 blocks ==40161== possibly lost: 0 bytes in 0 blocks ==40161== still reachable: 56 bytes in 3 blocks ==40161== suppressed: 35,070 bytes in 283 blocks ==40161== Reachable blocks (those to which a pointer was found) are not shown. ==40161== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40161== ==40161== For lists of detected and suppressed errors, rerun with: -s ==40161== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)