==40267== Memcheck, a memory error detector ==40267== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40267== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40267== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40267== Parent PID: 24236 ==40267== ==40267== ==40267== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40267== Open file descriptor 12: ==40267== at 0xFEB50FD: pipe (pipe.c:29) ==40267== by 0x199CF07D: ??? ==40267== by 0x12E474CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40267== by 0x10410418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40267== by 0x103A9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40267== by 0x10599D38: PetscInitialize (pinit.c:924) ==40267== by 0xF7B5E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40267== by 0xF7B5EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40267== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40267== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40267== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40267== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40267== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40267== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40267== ==40267== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40267== at 0xFEB9A9C: __open_nocancel (open64_nocancel.c:39) ==40267== by 0xFE3DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40267== by 0xF7F3822: ??? ==40267== by 0xF7F396F: ??? ==40267== by 0x12EEC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40267== by 0x12EEC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40267== by 0x12EA2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40267== by 0x12E472DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40267== by 0x10410418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40267== by 0x103A9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40267== by 0x10599D38: PetscInitialize (pinit.c:924) ==40267== by 0xF7B5E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40267== by 0xF7B5EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40267== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40267== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40267== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40267== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40267== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40267== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40267== ==40267== Open file descriptor 145: ==40267== ==40267== ==40267== Open file descriptor 142: ==40267== ==40267== ==40267== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==40267== ==40267== ==40267== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40267== ==40267== ==40267== ==40267== HEAP SUMMARY: ==40267== in use at exit: 35,126 bytes in 286 blocks ==40267== total heap usage: 2,078,075 allocs, 2,077,789 frees, 378,007,051 bytes allocated ==40267== ==40267== LEAK SUMMARY: ==40267== definitely lost: 0 bytes in 0 blocks ==40267== indirectly lost: 0 bytes in 0 blocks ==40267== possibly lost: 0 bytes in 0 blocks ==40267== still reachable: 56 bytes in 3 blocks ==40267== suppressed: 35,070 bytes in 283 blocks ==40267== Reachable blocks (those to which a pointer was found) are not shown. ==40267== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40267== ==40267== For lists of detected and suppressed errors, rerun with: -s ==40267== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)