==40103== Memcheck, a memory error detector ==40103== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40103== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40103== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40103== Parent PID: 24242 ==40103== ==40103== ==40103== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40103== Open file descriptor 12: ==40103== at 0x10CD10FD: pipe (pipe.c:29) ==40103== by 0x196D007D: ??? ==40103== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40103== by 0x1091E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40103== by 0x108B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40103== by 0xF5AED38: PetscInitialize (pinit.c:924) ==40103== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40103== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40103== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40103== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40103== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40103== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40103== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40103== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40103== ==40103== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40103== at 0x10CD5A9C: __open_nocancel (open64_nocancel.c:39) ==40103== by 0x10C59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40103== by 0xF158822: ??? ==40103== by 0xF15896F: ??? ==40103== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40103== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40103== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40103== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40103== by 0x1091E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40103== by 0x108B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40103== by 0xF5AED38: PetscInitialize (pinit.c:924) ==40103== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40103== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40103== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40103== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40103== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40103== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40103== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40103== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40103== ==40103== Open file descriptor 145: ==40103== ==40103== ==40103== Open file descriptor 142: ==40103== ==40103== ==40103== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt ==40103== ==40103== ==40103== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40103== ==40103== ==40103== ==40103== HEAP SUMMARY: ==40103== in use at exit: 35,126 bytes in 286 blocks ==40103== total heap usage: 638,763 allocs, 638,477 frees, 181,774,363 bytes allocated ==40103== ==40103== LEAK SUMMARY: ==40103== definitely lost: 0 bytes in 0 blocks ==40103== indirectly lost: 0 bytes in 0 blocks ==40103== possibly lost: 0 bytes in 0 blocks ==40103== still reachable: 56 bytes in 3 blocks ==40103== suppressed: 35,070 bytes in 283 blocks ==40103== Reachable blocks (those to which a pointer was found) are not shown. ==40103== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40103== ==40103== For lists of detected and suppressed errors, rerun with: -s ==40103== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)