==29349== Memcheck, a memory error detector ==29349== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==29349== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==29349== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==29349== Parent PID: 24169 ==29349== ==29349== ==29349== FILE DESCRIPTORS: 9 open (3 std) at exit. ==29349== Open file descriptor 12: ==29349== at 0xFCA00FD: pipe (pipe.c:29) ==29349== by 0x196D307D: ??? ==29349== by 0x12B294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29349== by 0x101FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29349== by 0x10194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29349== by 0x10382D38: PetscInitialize (pinit.c:924) ==29349== by 0xF4B7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29349== by 0xF4B7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29349== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29349== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29349== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29349== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29349== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29349== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29349== ==29349== Open file descriptor 8: /dev/shm/open_mpi.0000 ==29349== at 0xFCA4A9C: __open_nocancel (open64_nocancel.c:39) ==29349== by 0xFC28BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==29349== by 0xF4FA822: ??? ==29349== by 0xF4FA96F: ??? ==29349== by 0x12BCE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29349== by 0x12BCE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29349== by 0x12B84922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29349== by 0x12B292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29349== by 0x101FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29349== by 0x10194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29349== by 0x10382D38: PetscInitialize (pinit.c:924) ==29349== by 0xF4B7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29349== by 0xF4B7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29349== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29349== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29349== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29349== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29349== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29349== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29349== ==29349== Open file descriptor 145: ==29349== ==29349== ==29349== Open file descriptor 142: ==29349== ==29349== ==29349== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==29349== ==29349== ==29349== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==29349== ==29349== ==29349== ==29349== HEAP SUMMARY: ==29349== in use at exit: 35,142 bytes in 286 blocks ==29349== total heap usage: 2,387,549 allocs, 2,387,263 frees, 463,467,331 bytes allocated ==29349== ==29349== LEAK SUMMARY: ==29349== definitely lost: 0 bytes in 0 blocks ==29349== indirectly lost: 0 bytes in 0 blocks ==29349== possibly lost: 0 bytes in 0 blocks ==29349== still reachable: 56 bytes in 3 blocks ==29349== suppressed: 35,086 bytes in 283 blocks ==29349== Reachable blocks (those to which a pointer was found) are not shown. ==29349== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==29349== ==29349== For lists of detected and suppressed errors, rerun with: -s ==29349== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)