==40945== Memcheck, a memory error detector ==40945== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40945== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40945== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40945== Parent PID: 24169 ==40945== ==40945== ==40945== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40945== Open file descriptor 12: ==40945== at 0x1096F0FD: pipe (pipe.c:29) ==40945== by 0x1B39507D: ??? ==40945== by 0x154E14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40945== by 0x10277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x10210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x6277D38: PetscInitialize (pinit.c:924) ==40945== by 0x10159E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40945== by 0x10159EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40945== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40945== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40945== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40945== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40945== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40945== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40945== ==40945== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40945== at 0x10973A9C: __open_nocancel (open64_nocancel.c:39) ==40945== by 0x108F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40945== by 0x6127822: ??? ==40945== by 0x612796F: ??? ==40945== by 0x155866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40945== by 0x15586938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40945== by 0x1553C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40945== by 0x154E12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40945== by 0x10277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x10210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x6277D38: PetscInitialize (pinit.c:924) ==40945== by 0x10159E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40945== by 0x10159EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40945== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40945== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40945== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40945== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40945== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40945== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40945== ==40945== Open file descriptor 145: ==40945== ==40945== ==40945== Open file descriptor 142: ==40945== ==40945== ==40945== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40945== ==40945== ==40945== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40945== ==40945== ==40945== ==40945== HEAP SUMMARY: ==40945== in use at exit: 35,295 bytes in 291 blocks ==40945== total heap usage: 738,531 allocs, 738,240 frees, 41,694,726 bytes allocated ==40945== ==40945== LEAK SUMMARY: ==40945== definitely lost: 0 bytes in 0 blocks ==40945== indirectly lost: 0 bytes in 0 blocks ==40945== possibly lost: 0 bytes in 0 blocks ==40945== still reachable: 120 bytes in 4 blocks ==40945== suppressed: 35,175 bytes in 287 blocks ==40945== Reachable blocks (those to which a pointer was found) are not shown. ==40945== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40945== ==40945== For lists of detected and suppressed errors, rerun with: -s ==40945== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)