==40014== Memcheck, a memory error detector ==40014== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40014== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40014== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==40014== Parent PID: 24446 ==40014== ==40014== ==40014== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40014== Open file descriptor 12: ==40014== at 0x10D130FD: pipe (pipe.c:29) ==40014== by 0x196D307D: ??? ==40014== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40014== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40014== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40014== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==40014== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40014== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40014== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40014== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40014== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40014== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40014== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40014== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==40014== ==40014== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40014== at 0x10D17A9C: __open_nocancel (open64_nocancel.c:39) ==40014== by 0x10C9BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40014== by 0xF15D822: ??? ==40014== by 0xF15D96F: ??? ==40014== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40014== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40014== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40014== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40014== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40014== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40014== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==40014== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40014== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40014== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40014== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40014== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40014== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40014== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40014== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==40014== ==40014== Open file descriptor 145: ==40014== ==40014== ==40014== Open file descriptor 142: ==40014== ==40014== ==40014== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==40014== ==40014== ==40014== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40014== ==40014== ==40014== ==40014== HEAP SUMMARY: ==40014== in use at exit: 35,215 bytes in 290 blocks ==40014== total heap usage: 563,534 allocs, 563,244 frees, 320,611,279 bytes allocated ==40014== ==40014== LEAK SUMMARY: ==40014== definitely lost: 0 bytes in 0 blocks ==40014== indirectly lost: 0 bytes in 0 blocks ==40014== possibly lost: 0 bytes in 0 blocks ==40014== still reachable: 56 bytes in 3 blocks ==40014== suppressed: 35,159 bytes in 287 blocks ==40014== Reachable blocks (those to which a pointer was found) are not shown. ==40014== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40014== ==40014== For lists of detected and suppressed errors, rerun with: -s ==40014== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)