==27541== Memcheck, a memory error detector ==27541== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27541== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27541== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27541== Parent PID: 24446 ==27541== ==27541== ==27541== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27541== Open file descriptor 12: ==27541== at 0x10DFA0FD: pipe (pipe.c:29) ==27541== by 0x196D307D: ??? ==27541== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27541== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==27541== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27541== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27541== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27541== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27541== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27541== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27541== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27541== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27541== ==27541== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27541== at 0x10DFEA9C: __open_nocancel (open64_nocancel.c:39) ==27541== by 0x10D82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27541== by 0xF15D822: ??? ==27541== by 0xF15D96F: ??? ==27541== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27541== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27541== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27541== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27541== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==27541== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27541== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27541== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27541== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27541== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27541== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27541== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27541== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27541== ==27541== Open file descriptor 145: ==27541== ==27541== ==27541== Open file descriptor 142: ==27541== ==27541== ==27541== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27541== ==27541== ==27541== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27541== ==27541== ==27541== ==27541== HEAP SUMMARY: ==27541== in use at exit: 35,142 bytes in 286 blocks ==27541== total heap usage: 9,686,835 allocs, 9,686,549 frees, 1,252,439,977 bytes allocated ==27541== ==27541== LEAK SUMMARY: ==27541== definitely lost: 0 bytes in 0 blocks ==27541== indirectly lost: 0 bytes in 0 blocks ==27541== possibly lost: 0 bytes in 0 blocks ==27541== still reachable: 56 bytes in 3 blocks ==27541== suppressed: 35,086 bytes in 283 blocks ==27541== Reachable blocks (those to which a pointer was found) are not shown. ==27541== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27541== ==27541== For lists of detected and suppressed errors, rerun with: -s ==27541== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)