==26015== Memcheck, a memory error detector ==26015== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26015== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26015== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==26015== Parent PID: 23875 ==26015== ==26015== ==26015== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26015== Open file descriptor 12: ==26015== at 0xF81A0FD: pipe (pipe.c:29) ==26015== by 0x196D307D: ??? ==26015== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26015== by 0x10112418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26015== by 0x100ABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26015== by 0x1029BD38: PetscInitialize (pinit.c:924) ==26015== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26015== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26015== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26015== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26015== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26015== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26015== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26015== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26015== ==26015== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26015== at 0xF81EA9C: __open_nocancel (open64_nocancel.c:39) ==26015== by 0xF7A2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26015== by 0xF15D822: ??? ==26015== by 0xF15D96F: ??? ==26015== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26015== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26015== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26015== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26015== by 0x10112418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26015== by 0x100ABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26015== by 0x1029BD38: PetscInitialize (pinit.c:924) ==26015== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26015== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26015== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26015== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26015== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26015== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26015== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26015== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26015== ==26015== Open file descriptor 145: ==26015== ==26015== ==26015== Open file descriptor 142: ==26015== ==26015== ==26015== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==26015== ==26015== ==26015== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26015== ==26015== ==26015== ==26015== HEAP SUMMARY: ==26015== in use at exit: 36,685 bytes in 311 blocks ==26015== total heap usage: 1,108,283 allocs, 1,107,972 frees, 84,879,367 bytes allocated ==26015== ==26015== LEAK SUMMARY: ==26015== definitely lost: 0 bytes in 0 blocks ==26015== indirectly lost: 0 bytes in 0 blocks ==26015== possibly lost: 0 bytes in 0 blocks ==26015== still reachable: 56 bytes in 3 blocks ==26015== suppressed: 36,629 bytes in 308 blocks ==26015== Reachable blocks (those to which a pointer was found) are not shown. ==26015== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26015== ==26015== For lists of detected and suppressed errors, rerun with: -s ==26015== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)