==39421== Memcheck, a memory error detector ==39421== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39421== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39421== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39421== Parent PID: 23875 ==39421== ==39421== ==39421== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39421== Open file descriptor 12: ==39421== at 0x10D130FD: pipe (pipe.c:29) ==39421== by 0x196D307D: ??? ==39421== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39421== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39421== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39421== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==39421== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39421== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39421== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39421== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39421== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39421== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39421== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39421== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39421== ==39421== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39421== at 0x10D17A9C: __open_nocancel (open64_nocancel.c:39) ==39421== by 0x10C9BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39421== by 0xF15D822: ??? ==39421== by 0xF15D96F: ??? ==39421== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39421== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39421== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39421== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39421== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39421== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39421== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==39421== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39421== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39421== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39421== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39421== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39421== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39421== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39421== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39421== ==39421== Open file descriptor 145: ==39421== ==39421== ==39421== Open file descriptor 142: ==39421== ==39421== ==39421== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39421== ==39421== ==39421== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39421== ==39421== ==39421== ==39421== HEAP SUMMARY: ==39421== in use at exit: 36,685 bytes in 311 blocks ==39421== total heap usage: 563,495 allocs, 563,184 frees, 320,648,412 bytes allocated ==39421== ==39421== LEAK SUMMARY: ==39421== definitely lost: 0 bytes in 0 blocks ==39421== indirectly lost: 0 bytes in 0 blocks ==39421== possibly lost: 0 bytes in 0 blocks ==39421== still reachable: 56 bytes in 3 blocks ==39421== suppressed: 36,629 bytes in 308 blocks ==39421== Reachable blocks (those to which a pointer was found) are not shown. ==39421== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39421== ==39421== For lists of detected and suppressed errors, rerun with: -s ==39421== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)