==26580== Memcheck, a memory error detector ==26580== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26580== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26580== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26580== Parent PID: 24118 ==26580== ==26580== ==26580== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26580== Open file descriptor 12: ==26580== at 0x10DFA0FD: pipe (pipe.c:29) ==26580== by 0x196D307D: ??? ==26580== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26580== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26580== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26580== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==26580== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26580== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26580== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26580== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26580== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26580== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26580== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26580== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==26580== ==26580== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26580== at 0x10DFEA9C: __open_nocancel (open64_nocancel.c:39) ==26580== by 0x10D82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26580== by 0xF15D822: ??? ==26580== by 0xF15D96F: ??? ==26580== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26580== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26580== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26580== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26580== by 0x10960418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26580== by 0x108F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26580== by 0xF5F0D38: PetscInitialize (pinit.c:924) ==26580== by 0xF11AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26580== by 0xF11AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26580== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26580== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26580== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26580== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26580== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26580== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==26580== ==26580== Open file descriptor 145: ==26580== ==26580== ==26580== Open file descriptor 142: ==26580== ==26580== ==26580== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26580== ==26580== ==26580== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26580== ==26580== ==26580== ==26580== HEAP SUMMARY: ==26580== in use at exit: 35,215 bytes in 290 blocks ==26580== total heap usage: 859,064 allocs, 858,774 frees, 173,594,396 bytes allocated ==26580== ==26580== LEAK SUMMARY: ==26580== definitely lost: 0 bytes in 0 blocks ==26580== indirectly lost: 0 bytes in 0 blocks ==26580== possibly lost: 0 bytes in 0 blocks ==26580== still reachable: 56 bytes in 3 blocks ==26580== suppressed: 35,159 bytes in 287 blocks ==26580== Reachable blocks (those to which a pointer was found) are not shown. ==26580== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26580== ==26580== For lists of detected and suppressed errors, rerun with: -s ==26580== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)