==39932== Memcheck, a memory error detector ==39932== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39932== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39932== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==39932== Parent PID: 23909 ==39932== ==39932== ==39932== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39932== Open file descriptor 12: ==39932== at 0x10BB40FD: pipe (pipe.c:29) ==39932== by 0x1B39807D: ??? ==39932== by 0x155354CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39932== by 0x104BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0x10455D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0x6277D38: PetscInitialize (pinit.c:924) ==39932== by 0x1039EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39932== by 0x1039EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39932== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39932== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39932== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39932== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39932== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39932== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==39932== ==39932== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39932== at 0x10BB8A9C: __open_nocancel (open64_nocancel.c:39) ==39932== by 0x10B3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39932== by 0x6127822: ??? ==39932== by 0x612796F: ??? ==39932== by 0x155DA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39932== by 0x155DA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39932== by 0x15590922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39932== by 0x155352DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39932== by 0x104BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0x10455D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0x6277D38: PetscInitialize (pinit.c:924) ==39932== by 0x1039EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39932== by 0x1039EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39932== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39932== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39932== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39932== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39932== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39932== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==39932== ==39932== Open file descriptor 145: ==39932== ==39932== ==39932== Open file descriptor 142: ==39932== ==39932== ==39932== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==39932== ==39932== ==39932== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39932== ==39932== ==39932== ==39932== HEAP SUMMARY: ==39932== in use at exit: 36,765 bytes in 312 blocks ==39932== total heap usage: 845,764 allocs, 845,452 frees, 129,862,482 bytes allocated ==39932== ==39932== LEAK SUMMARY: ==39932== definitely lost: 0 bytes in 0 blocks ==39932== indirectly lost: 0 bytes in 0 blocks ==39932== possibly lost: 0 bytes in 0 blocks ==39932== still reachable: 120 bytes in 4 blocks ==39932== suppressed: 36,645 bytes in 308 blocks ==39932== Reachable blocks (those to which a pointer was found) are not shown. ==39932== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39932== ==39932== For lists of detected and suppressed errors, rerun with: -s ==39932== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)