==39943== Memcheck, a memory error detector ==39943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39943== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==39943== Parent PID: 23909 ==39943== ==39943== ==39943== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39943== Open file descriptor 12: ==39943== at 0x109720FD: pipe (pipe.c:29) ==39943== by 0x1B39807D: ??? ==39943== by 0x154E44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39943== by 0x1027A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39943== by 0x10213D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39943== by 0x6277D38: PetscInitialize (pinit.c:924) ==39943== by 0x1015CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39943== by 0x1015CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39943== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39943== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39943== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39943== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39943== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39943== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==39943== ==39943== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39943== at 0x10976A9C: __open_nocancel (open64_nocancel.c:39) ==39943== by 0x108FABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39943== by 0x6127822: ??? ==39943== by 0x612796F: ??? ==39943== by 0x155896DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39943== by 0x15589938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39943== by 0x1553F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39943== by 0x154E42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39943== by 0x1027A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39943== by 0x10213D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39943== by 0x6277D38: PetscInitialize (pinit.c:924) ==39943== by 0x1015CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39943== by 0x1015CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39943== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39943== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39943== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39943== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39943== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39943== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==39943== ==39943== Open file descriptor 145: ==39943== ==39943== ==39943== Open file descriptor 142: ==39943== ==39943== ==39943== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==39943== ==39943== ==39943== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39943== ==39943== ==39943== ==39943== HEAP SUMMARY: ==39943== in use at exit: 36,765 bytes in 312 blocks ==39943== total heap usage: 738,489 allocs, 738,177 frees, 41,732,583 bytes allocated ==39943== ==39943== LEAK SUMMARY: ==39943== definitely lost: 0 bytes in 0 blocks ==39943== indirectly lost: 0 bytes in 0 blocks ==39943== possibly lost: 0 bytes in 0 blocks ==39943== still reachable: 120 bytes in 4 blocks ==39943== suppressed: 36,645 bytes in 308 blocks ==39943== Reachable blocks (those to which a pointer was found) are not shown. ==39943== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39943== ==39943== For lists of detected and suppressed errors, rerun with: -s ==39943== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)