==25404== Memcheck, a memory error detector ==25404== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25404== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25404== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info ==25404== Parent PID: 24077 ==25404== ==25404== ==25404== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25404== Open file descriptor 12: ==25404== at 0xED290FD: pipe (pipe.c:29) ==25404== by 0x196D807D: ??? ==25404== by 0x13C244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25404== by 0xE978418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25404== by 0xE911D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25404== by 0xD5E5D38: PetscInitialize (pinit.c:924) ==25404== by 0xD4B7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25404== by 0xD4B7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25404== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25404== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25404== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25404== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25404== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25404== by 0x1222F5: main (TestCell.cpp:19) ==25404== ==25404== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25404== at 0xED2DA9C: __open_nocancel (open64_nocancel.c:39) ==25404== by 0xECB1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25404== by 0xE87A822: ??? ==25404== by 0xE87A96F: ??? ==25404== by 0x13CC96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25404== by 0x13CC9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25404== by 0x13C7F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25404== by 0x13C242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25404== by 0xE978418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25404== by 0xE911D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25404== by 0xD5E5D38: PetscInitialize (pinit.c:924) ==25404== by 0xD4B7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25404== by 0xD4B7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25404== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25404== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25404== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25404== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25404== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25404== by 0x1222F5: main (TestCell.cpp:19) ==25404== ==25404== Open file descriptor 145: ==25404== ==25404== ==25404== Open file descriptor 142: ==25404== ==25404== ==25404== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt ==25404== ==25404== ==25404== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25404== ==25404== ==25404== ==25404== HEAP SUMMARY: ==25404== in use at exit: 35,270 bytes in 287 blocks ==25404== total heap usage: 5,167,307 allocs, 5,167,020 frees, 488,104,475 bytes allocated ==25404== ==25404== LEAK SUMMARY: ==25404== definitely lost: 0 bytes in 0 blocks ==25404== indirectly lost: 0 bytes in 0 blocks ==25404== possibly lost: 0 bytes in 0 blocks ==25404== still reachable: 184 bytes in 4 blocks ==25404== suppressed: 35,086 bytes in 283 blocks ==25404== Reachable blocks (those to which a pointer was found) are not shown. ==25404== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25404== ==25404== For lists of detected and suppressed errors, rerun with: -s ==25404== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)