==39751== Memcheck, a memory error detector ==39751== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39751== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39751== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39751== Parent PID: 24077 ==39751== ==39751== ==39751== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39751== Open file descriptor 12: ==39751== at 0x10D160FD: pipe (pipe.c:29) ==39751== by 0x196D807D: ??? ==39751== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39751== by 0x10963418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39751== by 0x108FCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39751== by 0xF5F3D38: PetscInitialize (pinit.c:924) ==39751== by 0xF11DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39751== by 0xF11DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39751== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39751== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39751== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39751== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39751== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39751== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39751== ==39751== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39751== at 0x10D1AA9C: __open_nocancel (open64_nocancel.c:39) ==39751== by 0x10C9EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39751== by 0xF160822: ??? ==39751== by 0xF16096F: ??? ==39751== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39751== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39751== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39751== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39751== by 0x10963418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39751== by 0x108FCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39751== by 0xF5F3D38: PetscInitialize (pinit.c:924) ==39751== by 0xF11DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39751== by 0xF11DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39751== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39751== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39751== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39751== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39751== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39751== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39751== ==39751== Open file descriptor 145: ==39751== ==39751== ==39751== Open file descriptor 142: ==39751== ==39751== ==39751== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39751== ==39751== ==39751== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39751== ==39751== ==39751== ==39751== HEAP SUMMARY: ==39751== in use at exit: 35,215 bytes in 290 blocks ==39751== total heap usage: 563,536 allocs, 563,246 frees, 320,611,461 bytes allocated ==39751== ==39751== LEAK SUMMARY: ==39751== definitely lost: 0 bytes in 0 blocks ==39751== indirectly lost: 0 bytes in 0 blocks ==39751== possibly lost: 0 bytes in 0 blocks ==39751== still reachable: 56 bytes in 3 blocks ==39751== suppressed: 35,159 bytes in 287 blocks ==39751== Reachable blocks (those to which a pointer was found) are not shown. ==39751== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39751== ==39751== For lists of detected and suppressed errors, rerun with: -s ==39751== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)