==40289== Memcheck, a memory error detector ==40289== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40289== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40289== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40289== Parent PID: 24077 ==40289== ==40289== ==40289== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40289== Open file descriptor 12: ==40289== at 0x10BB40FD: pipe (pipe.c:29) ==40289== by 0x1B39807D: ??? ==40289== by 0x155354CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40289== by 0x104BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40289== by 0x10455D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40289== by 0x6277D38: PetscInitialize (pinit.c:924) ==40289== by 0x1039EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40289== by 0x1039EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40289== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40289== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40289== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40289== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40289== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40289== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40289== ==40289== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40289== at 0x10BB8A9C: __open_nocancel (open64_nocancel.c:39) ==40289== by 0x10B3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40289== by 0x6127822: ??? ==40289== by 0x612796F: ??? ==40289== by 0x155DA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40289== by 0x155DA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40289== by 0x15590922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40289== by 0x155352DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40289== by 0x104BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40289== by 0x10455D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40289== by 0x6277D38: PetscInitialize (pinit.c:924) ==40289== by 0x1039EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40289== by 0x1039EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40289== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40289== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40289== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40289== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40289== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40289== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40289== ==40289== Open file descriptor 145: ==40289== ==40289== ==40289== Open file descriptor 142: ==40289== ==40289== ==40289== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40289== ==40289== ==40289== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40289== ==40289== ==40289== ==40289== HEAP SUMMARY: ==40289== in use at exit: 35,295 bytes in 291 blocks ==40289== total heap usage: 845,801 allocs, 845,510 frees, 129,824,307 bytes allocated ==40289== ==40289== LEAK SUMMARY: ==40289== definitely lost: 0 bytes in 0 blocks ==40289== indirectly lost: 0 bytes in 0 blocks ==40289== possibly lost: 0 bytes in 0 blocks ==40289== still reachable: 120 bytes in 4 blocks ==40289== suppressed: 35,175 bytes in 287 blocks ==40289== Reachable blocks (those to which a pointer was found) are not shown. ==40289== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40289== ==40289== For lists of detected and suppressed errors, rerun with: -s ==40289== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)