==40303== Memcheck, a memory error detector ==40303== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40303== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40303== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40303== Parent PID: 24077 ==40303== ==40303== ==40303== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40303== Open file descriptor 12: ==40303== at 0x109720FD: pipe (pipe.c:29) ==40303== by 0x1B39807D: ??? ==40303== by 0x154E44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40303== by 0x1027A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40303== by 0x10213D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40303== by 0x6277D38: PetscInitialize (pinit.c:924) ==40303== by 0x1015CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40303== by 0x1015CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40303== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40303== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40303== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40303== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40303== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40303== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40303== ==40303== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40303== at 0x10976A9C: __open_nocancel (open64_nocancel.c:39) ==40303== by 0x108FABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40303== by 0x6127822: ??? ==40303== by 0x612796F: ??? ==40303== by 0x155896DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40303== by 0x15589938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40303== by 0x1553F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40303== by 0x154E42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40303== by 0x1027A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40303== by 0x10213D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40303== by 0x6277D38: PetscInitialize (pinit.c:924) ==40303== by 0x1015CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40303== by 0x1015CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40303== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40303== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40303== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40303== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40303== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40303== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40303== ==40303== Open file descriptor 145: ==40303== ==40303== ==40303== Open file descriptor 142: ==40303== ==40303== ==40303== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40303== ==40303== ==40303== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40303== ==40303== ==40303== ==40303== HEAP SUMMARY: ==40303== in use at exit: 35,295 bytes in 291 blocks ==40303== total heap usage: 738,531 allocs, 738,240 frees, 41,695,334 bytes allocated ==40303== ==40303== LEAK SUMMARY: ==40303== definitely lost: 0 bytes in 0 blocks ==40303== indirectly lost: 0 bytes in 0 blocks ==40303== possibly lost: 0 bytes in 0 blocks ==40303== still reachable: 120 bytes in 4 blocks ==40303== suppressed: 35,175 bytes in 287 blocks ==40303== Reachable blocks (those to which a pointer was found) are not shown. ==40303== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40303== ==40303== For lists of detected and suppressed errors, rerun with: -s ==40303== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)