==40305== Memcheck, a memory error detector ==40305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40305== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info ==40305== Parent PID: 24077 ==40305== ==40305== ==40305== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40305== Open file descriptor 12: ==40305== at 0x109720FD: pipe (pipe.c:29) ==40305== by 0x1B39807D: ??? ==40305== by 0x154E44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40305== by 0x1027A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40305== by 0x10213D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40305== by 0x6277D38: PetscInitialize (pinit.c:924) ==40305== by 0x1015CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40305== by 0x1015CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40305== by 0x18B9F9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40305== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40305== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40305== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40305== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40305== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) ==40305== ==40305== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40305== at 0x10976A9C: __open_nocancel (open64_nocancel.c:39) ==40305== by 0x108FABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40305== by 0x6127822: ??? ==40305== by 0x612796F: ??? ==40305== by 0x155896DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40305== by 0x15589938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40305== by 0x1553F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40305== by 0x154E42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40305== by 0x1027A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40305== by 0x10213D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40305== by 0x6277D38: PetscInitialize (pinit.c:924) ==40305== by 0x1015CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40305== by 0x1015CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40305== by 0x18B9F9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40305== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40305== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40305== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40305== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40305== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) ==40305== ==40305== Open file descriptor 145: ==40305== ==40305== ==40305== Open file descriptor 142: ==40305== ==40305== ==40305== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt ==40305== ==40305== ==40305== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40305== ==40305== ==40305== ==40305== HEAP SUMMARY: ==40305== in use at exit: 35,375 bytes in 292 blocks ==40305== total heap usage: 246,879 allocs, 246,587 frees, 26,208,814 bytes allocated ==40305== ==40305== LEAK SUMMARY: ==40305== definitely lost: 0 bytes in 0 blocks ==40305== indirectly lost: 0 bytes in 0 blocks ==40305== possibly lost: 0 bytes in 0 blocks ==40305== still reachable: 200 bytes in 5 blocks ==40305== suppressed: 35,175 bytes in 287 blocks ==40305== Reachable blocks (those to which a pointer was found) are not shown. ==40305== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40305== ==40305== For lists of detected and suppressed errors, rerun with: -s ==40305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)