==40341== Memcheck, a memory error detector ==40341== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40341== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40341== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40341== Parent PID: 24077 ==40341== ==40341== ==40341== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40341== Open file descriptor 12: ==40341== at 0x110DD0FD: pipe (pipe.c:29) ==40341== by 0x1B39907D: ??? ==40341== by 0x143E54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40341== by 0x11B00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0x11A99D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0x11C45D38: PetscInitialize (pinit.c:924) ==40341== by 0x109DDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40341== by 0x109DDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40341== by 0x126AD2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40341== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40341== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40341== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40341== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40341== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40341== ==40341== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40341== at 0x110E1A9C: __open_nocancel (open64_nocancel.c:39) ==40341== by 0x11065BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40341== by 0x10A20822: ??? ==40341== by 0x10A2096F: ??? ==40341== by 0x1448A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40341== by 0x1448A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40341== by 0x14440922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40341== by 0x143E52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40341== by 0x11B00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0x11A99D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40341== by 0x11C45D38: PetscInitialize (pinit.c:924) ==40341== by 0x109DDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40341== by 0x109DDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40341== by 0x126AD2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40341== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40341== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40341== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40341== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40341== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40341== ==40341== Open file descriptor 145: ==40341== ==40341== ==40341== Open file descriptor 142: ==40341== ==40341== ==40341== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40341== ==40341== ==40341== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40341== ==40341== ==40341== ==40341== HEAP SUMMARY: ==40341== in use at exit: 35,231 bytes in 290 blocks ==40341== total heap usage: 40,301 allocs, 40,011 frees, 8,094,907 bytes allocated ==40341== ==40341== LEAK SUMMARY: ==40341== definitely lost: 0 bytes in 0 blocks ==40341== indirectly lost: 0 bytes in 0 blocks ==40341== possibly lost: 0 bytes in 0 blocks ==40341== still reachable: 56 bytes in 3 blocks ==40341== suppressed: 35,175 bytes in 287 blocks ==40341== Reachable blocks (those to which a pointer was found) are not shown. ==40341== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40341== ==40341== For lists of detected and suppressed errors, rerun with: -s ==40341== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)