==39957== Memcheck, a memory error detector ==39957== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39957== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39957== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39957== Parent PID: 24057 ==39957== ==39957== ==39957== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39957== Open file descriptor 12: ==39957== at 0xF9040FD: pipe (pipe.c:29) ==39957== by 0x196D807D: ??? ==39957== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39957== by 0x101FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x10197D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x10385D38: PetscInitialize (pinit.c:924) ==39957== by 0xF11DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39957== by 0xF11DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39957== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39957== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39957== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39957== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39957== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39957== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==39957== ==39957== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39957== at 0xF908A9C: __open_nocancel (open64_nocancel.c:39) ==39957== by 0xF88CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39957== by 0xF160822: ??? ==39957== by 0xF16096F: ??? ==39957== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39957== by 0x101FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x10197D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x10385D38: PetscInitialize (pinit.c:924) ==39957== by 0xF11DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39957== by 0xF11DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39957== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39957== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39957== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39957== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39957== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39957== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==39957== ==39957== Open file descriptor 145: ==39957== ==39957== ==39957== Open file descriptor 142: ==39957== ==39957== ==39957== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==39957== ==39957== ==39957== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39957== ==39957== ==39957== ==39957== HEAP SUMMARY: ==39957== in use at exit: 35,215 bytes in 290 blocks ==39957== total heap usage: 709,243 allocs, 708,953 frees, 395,328,290 bytes allocated ==39957== ==39957== LEAK SUMMARY: ==39957== definitely lost: 0 bytes in 0 blocks ==39957== indirectly lost: 0 bytes in 0 blocks ==39957== possibly lost: 0 bytes in 0 blocks ==39957== still reachable: 56 bytes in 3 blocks ==39957== suppressed: 35,159 bytes in 287 blocks ==39957== Reachable blocks (those to which a pointer was found) are not shown. ==39957== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39957== ==39957== For lists of detected and suppressed errors, rerun with: -s ==39957== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)