==25964== Memcheck, a memory error detector ==25964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==25964== Parent PID: 24067 ==25964== ==25964== ==25964== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25964== Open file descriptor 12: ==25964== at 0xF8610FD: pipe (pipe.c:29) ==25964== by 0x196DA07D: ??? ==25964== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25964== by 0x1015C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0x100F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0x102A1D38: PetscInitialize (pinit.c:924) ==25964== by 0xF11FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25964== by 0xF11FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25964== by 0x165480: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25964== by 0x15DC09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25964== by 0x160DD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25964== by 0x160C78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25964== by 0x16130F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25964== by 0x15C025: main (TestCaBasedCellPopulation.cpp:19) ==25964== ==25964== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25964== at 0xF865A9C: __open_nocancel (open64_nocancel.c:39) ==25964== by 0xF7E9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25964== by 0xF162822: ??? ==25964== by 0xF16296F: ??? ==25964== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25964== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25964== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25964== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25964== by 0x1015C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0x100F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25964== by 0x102A1D38: PetscInitialize (pinit.c:924) ==25964== by 0xF11FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25964== by 0xF11FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25964== by 0x165480: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25964== by 0x15DC09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25964== by 0x160DD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25964== by 0x160C78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25964== by 0x16130F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25964== by 0x15C025: main (TestCaBasedCellPopulation.cpp:19) ==25964== ==25964== Open file descriptor 145: ==25964== ==25964== ==25964== Open file descriptor 142: ==25964== ==25964== ==25964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedCellPopulation_valgrind.txt ==25964== ==25964== ==25964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25964== ==25964== ==25964== ==25964== HEAP SUMMARY: ==25964== in use at exit: 35,215 bytes in 290 blocks ==25964== total heap usage: 59,662 allocs, 59,372 frees, 16,293,186 bytes allocated ==25964== ==25964== LEAK SUMMARY: ==25964== definitely lost: 0 bytes in 0 blocks ==25964== indirectly lost: 0 bytes in 0 blocks ==25964== possibly lost: 0 bytes in 0 blocks ==25964== still reachable: 56 bytes in 3 blocks ==25964== suppressed: 35,159 bytes in 287 blocks ==25964== Reachable blocks (those to which a pointer was found) are not shown. ==25964== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25964== ==25964== For lists of detected and suppressed errors, rerun with: -s ==25964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)