==40697== Memcheck, a memory error detector ==40697== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40697== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40697== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40697== Parent PID: 24026 ==40697== ==40697== ==40697== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40697== Open file descriptor 12: ==40697== at 0x125960FD: pipe (pipe.c:29) ==40697== by 0x1B39B07D: ??? ==40697== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40697== by 0x11E9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40697== by 0x11E37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40697== by 0x6210D38: PetscInitialize (pinit.c:924) ==40697== by 0x11D5DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40697== by 0x11D5DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40697== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40697== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40697== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40697== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40697== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40697== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40697== ==40697== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40697== at 0x1259AA9C: __open_nocancel (open64_nocancel.c:39) ==40697== by 0x1251EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40697== by 0x11DA0822: ??? ==40697== by 0x11DA096F: ??? ==40697== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40697== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40697== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40697== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40697== by 0x11E9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40697== by 0x11E37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40697== by 0x6210D38: PetscInitialize (pinit.c:924) ==40697== by 0x11D5DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40697== by 0x11D5DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40697== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40697== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40697== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40697== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40697== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40697== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40697== ==40697== Open file descriptor 145: ==40697== ==40697== ==40697== Open file descriptor 142: ==40697== ==40697== ==40697== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==40697== ==40697== ==40697== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40697== ==40697== ==40697== ==40697== HEAP SUMMARY: ==40697== in use at exit: 36,781 bytes in 312 blocks ==40697== total heap usage: 1,601,428 allocs, 1,601,116 frees, 127,319,800 bytes allocated ==40697== ==40697== LEAK SUMMARY: ==40697== definitely lost: 0 bytes in 0 blocks ==40697== indirectly lost: 0 bytes in 0 blocks ==40697== possibly lost: 0 bytes in 0 blocks ==40697== still reachable: 136 bytes in 4 blocks ==40697== suppressed: 36,645 bytes in 308 blocks ==40697== Reachable blocks (those to which a pointer was found) are not shown. ==40697== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40697== ==40697== For lists of detected and suppressed errors, rerun with: -s ==40697== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)