==40197== Memcheck, a memory error detector ==40197== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40197== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40197== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40197== Parent PID: 24153 ==40197== ==40197== ==40197== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40197== Open file descriptor 12: ==40197== at 0xF9060FD: pipe (pipe.c:29) ==40197== by 0x196DA07D: ??? ==40197== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40197== by 0x10201418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40197== by 0x1019AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40197== by 0x10388D38: PetscInitialize (pinit.c:924) ==40197== by 0xF11FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40197== by 0xF11FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40197== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40197== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40197== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40197== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40197== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40197== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40197== ==40197== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40197== at 0xF90AA9C: __open_nocancel (open64_nocancel.c:39) ==40197== by 0xF88EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40197== by 0xF162822: ??? ==40197== by 0xF16296F: ??? ==40197== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40197== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40197== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40197== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40197== by 0x10201418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40197== by 0x1019AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40197== by 0x10388D38: PetscInitialize (pinit.c:924) ==40197== by 0xF11FE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40197== by 0xF11FEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40197== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40197== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40197== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40197== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40197== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40197== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40197== ==40197== Open file descriptor 145: ==40197== ==40197== ==40197== Open file descriptor 142: ==40197== ==40197== ==40197== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40197== ==40197== ==40197== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40197== ==40197== ==40197== ==40197== HEAP SUMMARY: ==40197== in use at exit: 35,215 bytes in 290 blocks ==40197== total heap usage: 709,243 allocs, 708,953 frees, 395,328,572 bytes allocated ==40197== ==40197== LEAK SUMMARY: ==40197== definitely lost: 0 bytes in 0 blocks ==40197== indirectly lost: 0 bytes in 0 blocks ==40197== possibly lost: 0 bytes in 0 blocks ==40197== still reachable: 56 bytes in 3 blocks ==40197== suppressed: 35,159 bytes in 287 blocks ==40197== Reachable blocks (those to which a pointer was found) are not shown. ==40197== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40197== ==40197== For lists of detected and suppressed errors, rerun with: -s ==40197== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)