==25938== Memcheck, a memory error detector ==25938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==25938== Parent PID: 24091 ==25938== ==25938== ==25938== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25938== Open file descriptor 12: ==25938== at 0xEFAD0FD: pipe (pipe.c:29) ==25938== by 0x196DC07D: ??? ==25938== by 0x13C784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25938== by 0xEBFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0xEB93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0xD88AD38: PetscInitialize (pinit.c:924) ==25938== by 0xD6F9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25938== by 0xD6F9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25938== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25938== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25938== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25938== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25938== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25938== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25938== ==25938== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25938== at 0xEFB1A9C: __open_nocancel (open64_nocancel.c:39) ==25938== by 0xEF35BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25938== by 0xD736822: ??? ==25938== by 0xD73696F: ??? ==25938== by 0x13D1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25938== by 0x13D1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25938== by 0x13CD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25938== by 0x13C782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25938== by 0xEBFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0xEB93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0xD88AD38: PetscInitialize (pinit.c:924) ==25938== by 0xD6F9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25938== by 0xD6F9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25938== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25938== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25938== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25938== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25938== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25938== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25938== ==25938== Open file descriptor 145: ==25938== ==25938== ==25938== Open file descriptor 142: ==25938== ==25938== ==25938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==25938== ==25938== ==25938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25938== ==25938== ==25938== ==25938== HEAP SUMMARY: ==25938== in use at exit: 35,167 bytes in 289 blocks ==25938== total heap usage: 149,893 allocs, 149,604 frees, 18,553,525 bytes allocated ==25938== ==25938== LEAK SUMMARY: ==25938== definitely lost: 0 bytes in 0 blocks ==25938== indirectly lost: 0 bytes in 0 blocks ==25938== possibly lost: 0 bytes in 0 blocks ==25938== still reachable: 24 bytes in 2 blocks ==25938== suppressed: 35,143 bytes in 287 blocks ==25938== Reachable blocks (those to which a pointer was found) are not shown. ==25938== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25938== ==25938== For lists of detected and suppressed errors, rerun with: -s ==25938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)