==40588== Memcheck, a memory error detector ==40588== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40588== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40588== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40588== Parent PID: 24140 ==40588== ==40588== ==40588== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40588== Open file descriptor 12: ==40588== at 0x125D80FD: pipe (pipe.c:29) ==40588== by 0x1B39D07D: ??? ==40588== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40588== by 0x11EE0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40588== by 0x11E79D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40588== by 0x6277D38: PetscInitialize (pinit.c:924) ==40588== by 0x11DC2E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40588== by 0x11DC2EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40588== by 0x224375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40588== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40588== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40588== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40588== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40588== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40588== ==40588== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40588== at 0x125DCA9C: __open_nocancel (open64_nocancel.c:39) ==40588== by 0x12560BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40588== by 0x6121822: ??? ==40588== by 0x612196F: ??? ==40588== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40588== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40588== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40588== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40588== by 0x11EE0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40588== by 0x11E79D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40588== by 0x6277D38: PetscInitialize (pinit.c:924) ==40588== by 0x11DC2E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40588== by 0x11DC2EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40588== by 0x224375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40588== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40588== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40588== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40588== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40588== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40588== ==40588== Open file descriptor 145: ==40588== ==40588== ==40588== Open file descriptor 142: ==40588== ==40588== ==40588== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40588== ==40588== ==40588== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40588== ==40588== ==40588== ==40588== HEAP SUMMARY: ==40588== in use at exit: 35,142 bytes in 286 blocks ==40588== total heap usage: 3,697,739 allocs, 3,697,453 frees, 289,245,503 bytes allocated ==40588== ==40588== LEAK SUMMARY: ==40588== definitely lost: 0 bytes in 0 blocks ==40588== indirectly lost: 0 bytes in 0 blocks ==40588== possibly lost: 0 bytes in 0 blocks ==40588== still reachable: 56 bytes in 3 blocks ==40588== suppressed: 35,086 bytes in 283 blocks ==40588== Reachable blocks (those to which a pointer was found) are not shown. ==40588== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40588== ==40588== For lists of detected and suppressed errors, rerun with: -s ==40588== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)