==42951== Memcheck, a memory error detector ==42951== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==42951== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==42951== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==42951== Parent PID: 23869 ==42951== ==42951== ==42951== FILE DESCRIPTORS: 9 open (3 std) at exit. ==42951== Open file descriptor 12: ==42951== at 0xA7FA0FD: pipe (pipe.c:29) ==42951== by 0x1436507D: ??? ==42951== by 0xD9AB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42951== by 0xABC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42951== by 0xAB5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42951== by 0xB0A3D38: PetscInitialize (pinit.c:924) ==42951== by 0xA0DEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42951== by 0xA0DEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42951== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==42951== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42951== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42951== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42951== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42951== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==42951== ==42951== Open file descriptor 8: /dev/shm/open_mpi.0000 ==42951== at 0xA7FEA9C: __open_nocancel (open64_nocancel.c:39) ==42951== by 0xA782BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==42951== by 0xA11B822: ??? ==42951== by 0xA11B96F: ??? ==42951== by 0xDA506DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42951== by 0xDA50938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42951== by 0xDA06922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42951== by 0xD9AB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42951== by 0xABC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42951== by 0xAB5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42951== by 0xB0A3D38: PetscInitialize (pinit.c:924) ==42951== by 0xA0DEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42951== by 0xA0DEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42951== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==42951== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42951== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42951== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42951== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42951== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==42951== ==42951== Open file descriptor 145: ==42951== ==42951== ==42951== Open file descriptor 142: ==42951== ==42951== ==42951== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==42951== ==42951== ==42951== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==42951== ==42951== ==42951== ==42951== HEAP SUMMARY: ==42951== in use at exit: 17,498 bytes in 82 blocks ==42951== total heap usage: 817,632 allocs, 817,550 frees, 110,851,875 bytes allocated ==42951== ==42951== LEAK SUMMARY: ==42951== definitely lost: 0 bytes in 0 blocks ==42951== indirectly lost: 0 bytes in 0 blocks ==42951== possibly lost: 0 bytes in 0 blocks ==42951== still reachable: 24 bytes in 2 blocks ==42951== suppressed: 17,474 bytes in 80 blocks ==42951== Reachable blocks (those to which a pointer was found) are not shown. ==42951== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==42951== ==42951== For lists of detected and suppressed errors, rerun with: -s ==42951== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 61 from 35)