==23873== Memcheck, a memory error detector ==23873== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==23873== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==23873== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCitations -malloc_debug -malloc_dump -memory_info ==23873== Parent PID: 23869 ==23873== ==23873== ==23873== FILE DESCRIPTORS: 9 open (3 std) at exit. ==23873== Open file descriptor 12: ==23873== at 0x4CC30FD: pipe (pipe.c:29) ==23873== by 0xAEBD07D: ??? ==23873== by 0x644B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==23873== by 0x4EC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==23873== by 0x4E59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==23873== by 0x5047D38: PetscInitialize (pinit.c:924) ==23873== by 0x4908E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==23873== by 0x4908EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==23873== by 0x118501: TestCitations::TestChasteCitation() (TestCitations.hpp:72) ==23873== by 0x118DAE: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) ==23873== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==23873== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==23873== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==23873== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==23873== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==23873== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==23873== by 0x110C15: main (TestCitations.cpp:18) ==23873== ==23873== Open file descriptor 8: /dev/shm/open_mpi.0000 ==23873== at 0x4CC7A9C: __open_nocancel (open64_nocancel.c:39) ==23873== by 0x4C4BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==23873== by 0x4945822: ??? ==23873== by 0x494596F: ??? ==23873== by 0x64F26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==23873== by 0x64F2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==23873== by 0x64A8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==23873== by 0x644B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==23873== by 0x4EC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==23873== by 0x4E59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==23873== by 0x5047D38: PetscInitialize (pinit.c:924) ==23873== by 0x4908E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==23873== by 0x4908EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==23873== by 0x118501: TestCitations::TestChasteCitation() (TestCitations.hpp:72) ==23873== by 0x118DAE: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) ==23873== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==23873== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==23873== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==23873== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==23873== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==23873== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==23873== by 0x110C15: main (TestCitations.cpp:18) ==23873== ==23873== Open file descriptor 145: ==23873== ==23873== ==23873== Open file descriptor 142: ==23873== ==23873== ==23873== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCitations_valgrind.txt ==23873== ==23873== ==23873== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==23873== ==23873== ==23873== ==23873== HEAP SUMMARY: ==23873== in use at exit: 16,522 bytes in 72 blocks ==23873== total heap usage: 28,533 allocs, 28,461 frees, 6,158,196 bytes allocated ==23873== ==23873== LEAK SUMMARY: ==23873== definitely lost: 0 bytes in 0 blocks ==23873== indirectly lost: 0 bytes in 0 blocks ==23873== possibly lost: 0 bytes in 0 blocks ==23873== still reachable: 24 bytes in 2 blocks ==23873== suppressed: 16,498 bytes in 70 blocks ==23873== Reachable blocks (those to which a pointer was found) are not shown. ==23873== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==23873== ==23873== For lists of detected and suppressed errors, rerun with: -s ==23873== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)