==40060== Memcheck, a memory error detector ==40060== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40060== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40060== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40060== Parent PID: 23869 ==40060== ==40060== ==40060== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40060== Open file descriptor 12: ==40060== at 0x1120A0FD: pipe (pipe.c:29) ==40060== by 0x1B39F07D: ??? ==40060== by 0x143E54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40060== by 0x11B03418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40060== by 0x11A9CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40060== by 0x11C48D38: PetscInitialize (pinit.c:924) ==40060== by 0x10A44E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40060== by 0x10A44EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40060== by 0x23B27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40060== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40060== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40060== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40060== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40060== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40060== ==40060== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40060== at 0x1120EA9C: __open_nocancel (open64_nocancel.c:39) ==40060== by 0x11192BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40060== by 0x6121822: ??? ==40060== by 0x612196F: ??? ==40060== by 0x1448A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40060== by 0x1448A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40060== by 0x14440922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40060== by 0x143E52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40060== by 0x11B03418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40060== by 0x11A9CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40060== by 0x11C48D38: PetscInitialize (pinit.c:924) ==40060== by 0x10A44E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40060== by 0x10A44EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40060== by 0x23B27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40060== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40060== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40060== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40060== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40060== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40060== ==40060== Open file descriptor 145: ==40060== ==40060== ==40060== Open file descriptor 142: ==40060== ==40060== ==40060== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40060== ==40060== ==40060== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40060== ==40060== ==40060== ==40060== HEAP SUMMARY: ==40060== in use at exit: 16,977 bytes in 69 blocks ==40060== total heap usage: 6,294,108 allocs, 6,294,039 frees, 726,710,337 bytes allocated ==40060== ==40060== LEAK SUMMARY: ==40060== definitely lost: 0 bytes in 0 blocks ==40060== indirectly lost: 0 bytes in 0 blocks ==40060== possibly lost: 0 bytes in 0 blocks ==40060== still reachable: 56 bytes in 3 blocks ==40060== suppressed: 16,921 bytes in 66 blocks ==40060== Reachable blocks (those to which a pointer was found) are not shown. ==40060== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40060== ==40060== For lists of detected and suppressed errors, rerun with: -s ==40060== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)