==26662== Memcheck, a memory error detector ==26662== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26662== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26662== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==26662== Parent PID: 23869 ==26662== ==26662== ==26662== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26662== Open file descriptor 12: ==26662== at 0xFCE70FD: pipe (pipe.c:29) ==26662== by 0x196DD07D: ??? ==26662== by 0x12B294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26662== by 0x10243418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26662== by 0x101DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26662== by 0x10388D38: PetscInitialize (pinit.c:924) ==26662== by 0xF4BCE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26662== by 0xF4BCEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26662== by 0x222440: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26662== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26662== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26662== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26662== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26662== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26662== ==26662== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26662== at 0xFCEBA9C: __open_nocancel (open64_nocancel.c:39) ==26662== by 0xFC6FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26662== by 0xF4F9822: ??? ==26662== by 0xF4F996F: ??? ==26662== by 0x12BCE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26662== by 0x12BCE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26662== by 0x12B84922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26662== by 0x12B292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26662== by 0x10243418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26662== by 0x101DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26662== by 0x10388D38: PetscInitialize (pinit.c:924) ==26662== by 0xF4BCE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26662== by 0xF4BCEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26662== by 0x222440: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26662== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26662== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26662== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26662== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26662== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26662== ==26662== Open file descriptor 145: ==26662== ==26662== ==26662== Open file descriptor 142: ==26662== ==26662== ==26662== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==26662== ==26662== ==26662== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26662== ==26662== ==26662== ==26662== HEAP SUMMARY: ==26662== in use at exit: 16,961 bytes in 69 blocks ==26662== total heap usage: 8,104,817 allocs, 8,104,748 frees, 1,363,636,025 bytes allocated ==26662== ==26662== LEAK SUMMARY: ==26662== definitely lost: 0 bytes in 0 blocks ==26662== indirectly lost: 0 bytes in 0 blocks ==26662== possibly lost: 0 bytes in 0 blocks ==26662== still reachable: 56 bytes in 3 blocks ==26662== suppressed: 16,905 bytes in 66 blocks ==26662== Reachable blocks (those to which a pointer was found) are not shown. ==26662== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26662== ==26662== For lists of detected and suppressed errors, rerun with: -s ==26662== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)