==25072== Memcheck, a memory error detector ==25072== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25072== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25072== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==25072== Parent PID: 24808 ==25072== ==25072== Warning: invalid file descriptor -1 in syscall close() ==25072== ==25072== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25072== Open file descriptor 12: ==25072== at 0x65A20FD: pipe (pipe.c:29) ==25072== by 0xAF3207D: ??? ==25072== by 0x8F4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25072== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25072== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25072== by 0x49C3D38: PetscInitialize (pinit.c:924) ==25072== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25072== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25072== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25072== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25072== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25072== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25072== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25072== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==25072== ==25072== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25072== at 0x65A6A9C: __open_nocancel (open64_nocancel.c:39) ==25072== by 0x652ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25072== by 0x5C52822: ??? ==25072== by 0x5C5296F: ??? ==25072== by 0x8FF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25072== by 0x8FF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25072== by 0x8FA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25072== by 0x8F4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25072== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25072== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25072== by 0x49C3D38: PetscInitialize (pinit.c:924) ==25072== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25072== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25072== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25072== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25072== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25072== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25072== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25072== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==25072== ==25072== Open file descriptor 145: ==25072== ==25072== ==25072== Open file descriptor 142: ==25072== ==25072== ==25072== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==25072== ==25072== ==25072== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25072== ==25072== ==25072== ==25072== HEAP SUMMARY: ==25072== in use at exit: 35,183 bytes in 299 blocks ==25072== total heap usage: 98,615 allocs, 98,316 frees, 81,579,909 bytes allocated ==25072== ==25072== LEAK SUMMARY: ==25072== definitely lost: 0 bytes in 0 blocks ==25072== indirectly lost: 0 bytes in 0 blocks ==25072== possibly lost: 0 bytes in 0 blocks ==25072== still reachable: 24 bytes in 2 blocks ==25072== suppressed: 35,159 bytes in 297 blocks ==25072== Reachable blocks (those to which a pointer was found) are not shown. ==25072== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25072== ==25072== For lists of detected and suppressed errors, rerun with: -s ==25072== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)