==40963== Memcheck, a memory error detector ==40963== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40963== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40963== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40963== Parent PID: 24098 ==40963== ==40963== ==40963== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40963== Open file descriptor 12: ==40963== at 0x125960FD: pipe (pipe.c:29) ==40963== by 0x1B39D07D: ??? ==40963== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40963== by 0x11E9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40963== by 0x11E37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40963== by 0x6210D38: PetscInitialize (pinit.c:924) ==40963== by 0x11D5DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40963== by 0x11D5DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40963== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40963== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40963== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40963== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40963== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40963== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40963== ==40963== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40963== at 0x1259AA9C: __open_nocancel (open64_nocancel.c:39) ==40963== by 0x1251EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40963== by 0x11D9A822: ??? ==40963== by 0x11D9A96F: ??? ==40963== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40963== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40963== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40963== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40963== by 0x11E9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40963== by 0x11E37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40963== by 0x6210D38: PetscInitialize (pinit.c:924) ==40963== by 0x11D5DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40963== by 0x11D5DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40963== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40963== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40963== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40963== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40963== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40963== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40963== ==40963== Open file descriptor 145: ==40963== ==40963== ==40963== Open file descriptor 142: ==40963== ==40963== ==40963== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40963== ==40963== ==40963== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40963== ==40963== ==40963== ==40963== HEAP SUMMARY: ==40963== in use at exit: 35,295 bytes in 291 blocks ==40963== total heap usage: 37,689 allocs, 37,398 frees, 7,876,343 bytes allocated ==40963== ==40963== LEAK SUMMARY: ==40963== definitely lost: 0 bytes in 0 blocks ==40963== indirectly lost: 0 bytes in 0 blocks ==40963== possibly lost: 0 bytes in 0 blocks ==40963== still reachable: 136 bytes in 4 blocks ==40963== suppressed: 35,159 bytes in 287 blocks ==40963== Reachable blocks (those to which a pointer was found) are not shown. ==40963== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40963== ==40963== For lists of detected and suppressed errors, rerun with: -s ==40963== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)