==26449== Memcheck, a memory error detector ==26449== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26449== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26449== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==26449== Parent PID: 24549 ==26449== ==26449== ==26449== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26449== Open file descriptor 12: ==26449== at 0xF8EF0FD: pipe (pipe.c:29) ==26449== by 0x1A50107D: ??? ==26449== by 0x1469C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26449== by 0xF53C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0xF4D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0xE1CCD38: PetscInitialize (pinit.c:924) ==26449== by 0xE03BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26449== by 0xE03BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26449== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26449== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26449== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26449== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26449== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26449== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26449== ==26449== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26449== at 0xF8F3A9C: __open_nocancel (open64_nocancel.c:39) ==26449== by 0xF877BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26449== by 0xE078822: ??? ==26449== by 0xE07896F: ??? ==26449== by 0x147416DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26449== by 0x14741938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26449== by 0x146F7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26449== by 0x1469C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26449== by 0xF53C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0xF4D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0xE1CCD38: PetscInitialize (pinit.c:924) ==26449== by 0xE03BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26449== by 0xE03BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26449== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26449== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26449== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26449== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26449== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26449== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26449== ==26449== Open file descriptor 145: ==26449== ==26449== ==26449== Open file descriptor 142: ==26449== ==26449== ==26449== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==26449== ==26449== ==26449== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26449== ==26449== ==26449== ==26449== HEAP SUMMARY: ==26449== in use at exit: 35,167 bytes in 289 blocks ==26449== total heap usage: 150,279 allocs, 149,990 frees, 18,589,104 bytes allocated ==26449== ==26449== LEAK SUMMARY: ==26449== definitely lost: 0 bytes in 0 blocks ==26449== indirectly lost: 0 bytes in 0 blocks ==26449== possibly lost: 0 bytes in 0 blocks ==26449== still reachable: 24 bytes in 2 blocks ==26449== suppressed: 35,143 bytes in 287 blocks ==26449== Reachable blocks (those to which a pointer was found) are not shown. ==26449== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26449== ==26449== For lists of detected and suppressed errors, rerun with: -s ==26449== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)