==40760== Memcheck, a memory error detector ==40760== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40760== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40760== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40760== Parent PID: 24505 ==40760== ==40760== ==40760== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40760== Open file descriptor 12: ==40760== at 0x114F40FD: pipe (pipe.c:29) ==40760== by 0x1BDC207D: ??? ==40760== by 0x15F5C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40760== by 0x10DFC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40760== by 0x10D95D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40760== by 0x6277D38: PetscInitialize (pinit.c:924) ==40760== by 0x10CDEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40760== by 0x10CDEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40760== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40760== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40760== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40760== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40760== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40760== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40760== ==40760== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40760== at 0x114F8A9C: __open_nocancel (open64_nocancel.c:39) ==40760== by 0x1147CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40760== by 0x6121822: ??? ==40760== by 0x612196F: ??? ==40760== by 0x160016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40760== by 0x16001938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40760== by 0x15FB7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40760== by 0x15F5C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40760== by 0x10DFC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40760== by 0x10D95D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40760== by 0x6277D38: PetscInitialize (pinit.c:924) ==40760== by 0x10CDEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40760== by 0x10CDEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40760== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40760== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40760== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40760== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40760== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40760== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40760== ==40760== Open file descriptor 145: ==40760== ==40760== ==40760== Open file descriptor 142: ==40760== ==40760== ==40760== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40760== ==40760== ==40760== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40760== ==40760== ==40760== ==40760== HEAP SUMMARY: ==40760== in use at exit: 35,279 bytes in 291 blocks ==40760== total heap usage: 846,187 allocs, 845,896 frees, 129,859,670 bytes allocated ==40760== ==40760== LEAK SUMMARY: ==40760== definitely lost: 0 bytes in 0 blocks ==40760== indirectly lost: 0 bytes in 0 blocks ==40760== possibly lost: 0 bytes in 0 blocks ==40760== still reachable: 120 bytes in 4 blocks ==40760== suppressed: 35,159 bytes in 287 blocks ==40760== Reachable blocks (those to which a pointer was found) are not shown. ==40760== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40760== ==40760== For lists of detected and suppressed errors, rerun with: -s ==40760== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)